Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs56325371 chr16:89595036 T/A 0.000303 177 28.58 25.53 19.2 KM Plot
PCPG rs56346774 chr2:127932551 G/A 4.49E-5 174 25.87 18.2 33.9 KM Plot
PCPG rs56352308 chr2:241526053 A/T 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs56362330 chr10:50549658 T/TA 3.73E-6 177 24.53 34.37 25.17 KM Plot
PCPG rs56374309 chr6:26566887 AGTGAC/A 7.54E-7 176 10.68 35.32 24.52 KM Plot
PCPG rs56379434 chr7:105159461 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56381951 chr2:2746073 C/T 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs56394020 chr8:1756462 G/C 1.07E-5 176 25 28.17 25.17 KM Plot
PCPG rs56399248 chr2:61558615 T/G 0.000452 178 24.1 30.93 17.85 KM Plot
PCPG rs56412918 chr2:61595416 A/G 6.44E-5 177 24.1 30.93 10.3 KM Plot
PCPG rs56667361 chr16:1679264 AC/A 0 175 25.47 22.77 2.93 KM Plot
PCPG rs56781814 chr7:33707590 T/TTGTGTG 1.43E-7 174 25.4 25.43 19.87 KM Plot
PCPG rs56783920 chr2:241532620 C/A 3.44E-5 178 25.92 20.2 10.3 KM Plot
PCPG rs56864106 chr16:90125958 C/T 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs568992 chr13:37515947 G/A 4.51E-5 176 56.35 24.17 25.7 KM Plot